Missense3D

Structural impact of missense variants

About

Welcome to the Missense3D suite of resources, developed by Professor Michael Sternberg's Group and Dr Alessia David's Group. The Missense3D portal hosts resources developed to characterise and prioritise missense variants using protein 3D structure information.

Resources

Missense3D

Predicts structural changes from amino‑acid substitutions across structures, complexes, and AlphaFold models.

Missense3D-TM

Predicts structural disruption of missense variants in transmembrane proteins.

Databases

Missense3D-DB

Contains ~4 million precomputed structural predictions for human missense variants.

PTMdb

Enables exploration of millions of variants, PTMs, and AlphaFold visualisations.

AlphaDB

Contains Missense3D predictions for naturally occurring variants evaluated on AlphaFold models across the human proteome.

Other Resources

Phyre2

Predicts protein 3D structure using templates from the PDB and AlphaFold.

3DSeqCheck

Checks whether a protein structure sequence is consistent with the current UniProt entry.

GWYRE

Provides modelled and experimental structures of proteins and complexes annotated with mutation effects.

Legacy Versions

Missense3D Legacy

Missense3D (Legacy): Classic implementation for analysing structural impact of missense variants.

Missense3D PPI Legacy

Missense3D-PPI (Legacy): Predicts variant effects at protein–protein interfaces.

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